PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10002187m
Common NameCARUB_v10002187mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 153aa    MW: 17629.5 Da    PI: 9.0124
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10002187mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.89.2e-3373131159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK vk+++fprsYYrCt+ gC+vkk+v+r + d++vv++tYeg H h+
  Carubv10002187m  73 LDDGYRWRKYGQKAVKNNKFPRSYYRCTYGGCNVKKQVQRLTADQEVVVTTYEGVHSHP 131
                      59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-3358131IPR003657WRKY domain
SuperFamilySSF1182902.48E-2965132IPR003657WRKY domain
PROSITE profilePS5081129.89568133IPR003657WRKY domain
SMARTSM007745.2E-3873132IPR003657WRKY domain
PfamPF031061.3E-2674131IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0010055Biological Processatrichoblast differentiation
GO:0032107Biological Processregulation of response to nutrient levels
GO:0043620Biological Processregulation of DNA-templated transcription in response to stress
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MEGYDNGSLY APFLSLTSDS KPDHKLHQGE EEEEDGPKSR RSSEGCSRSN LESKKKGKKQ  60
RYAFQTRSQV DILDDGYRWR KYGQKAVKNN KFPRSYYRCT YGGCNVKKQV QRLTADQEVV  120
VTTYEGVHSH PIEKSTENFE HILTQMQIYS SF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-2863132776Probable WRKY transcription factor 4
2lex_A3e-2863132776Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00506DAPTransfer from AT5G13080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0024261e-141BT002426.1 Arabidopsis thaliana WRKY-like protein (At5g13080) mRNA, complete cds.
GenBankBT0065301e-141BT006530.1 Arabidopsis thaliana At5g13080 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006286397.11e-112hypothetical protein CARUB_v10002187mg
SwissprotQ9FYA23e-86WRK75_ARATH; Probable WRKY transcription factor 75
TrEMBLR0H3M31e-112R0H3M3_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.6__1258__AT5G13080.13e-91(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50928154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.12e-87WRKY DNA-binding protein 75